Difference between revisions of "File List"
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The SICdb dataset consists from data | The SICdb dataset consists from 7 files. Additional data is found on our [https://github.com/nrodemund/sicdb github repository], refer to [[Get Started]] for usage details. | ||
== Data Files == | == Data Files == | ||
| Line 8: | Line 8: | ||
|+ Files | |+ Files | ||
|- | |- | ||
! Name !! Short description | ! Name !! Short description | ||
|- | |- | ||
| cases.csv.gz || Contains basic data about admissions to icu. See [[Case Data]] for table details and [[Case Description]]. | | [[Case Data|cases.csv.gz]] || Contains basic data about admissions to icu. See [[Case Data]] for table details and [[Case Description]]. | ||
|- | |- | ||
| d_references.csv.gz || Contains the dictionary for all encoded fields in the SICdb dataset. || | | [[d_references|d_references.csv.gz]] || Contains the dictionary for all encoded fields in the SICdb dataset. || | ||
|- | |- | ||
| data_float_h.csv.gz || Contains hourly aggregated float data like monitor [[Signal Data|signals]] or respirator settings. Additionally raw minute data is included.See [[data_float_h]] and [[Signal Data]] for further information. || | | [[data_float_h|data_float_h.csv.gz]] || Contains hourly aggregated float data like monitor [[Signal Data|signals]] or respirator settings. Additionally raw minute data is included.See [[data_float_h]] and [[Signal Data]] for further information. || | ||
|- | |- | ||
| data_ref.csv.gz || Contains encoded (nominal) data related to an admission. || | | [[data_ref|data_ref.csv.gz]] || Contains encoded (nominal) data related to an admission. || | ||
|- | |- | ||
| laboratory.csv.gz || Contains laboratory results. || | | [[Laboratory Data|laboratory.csv.gz]] || Contains laboratory results. || | ||
|- | |- | ||
| medication.csv.gz || Contains data about medication given during ICU stay. || | | [[Medication Data|medication.csv.gz]] || Contains data about medication given during ICU stay. || | ||
|- | |- | ||
| | | [[Data range|data_range.csv.gz]] || Contains ranged data (from/to) || | ||
|- | |- | ||
| unitlog.csv.gz || Information about the patient's stay || | | [[Unitlog|unitlog.csv.gz]] || Information about the patient's stay || | ||
|} | |} | ||
== Configuration Files == | == Configuration Files == | ||
This data is found on our [https://github.com/nrodemund/sicdb github repository]. | |||
=== docker-compose.yml === | === docker-compose.yml === | ||
Latest revision as of 10:31, 9 November 2022
The SICdb dataset consists from 7 files. Additional data is found on our github repository, refer to Get Started for usage details.
Data Files
All data files are gzip compressed RFC4180 comma seperated files.
| Name | Short description | |
|---|---|---|
| cases.csv.gz | Contains basic data about admissions to icu. See Case Data for table details and Case Description. | |
| d_references.csv.gz | Contains the dictionary for all encoded fields in the SICdb dataset. | |
| data_float_h.csv.gz | Contains hourly aggregated float data like monitor signals or respirator settings. Additionally raw minute data is included.See data_float_h and Signal Data for further information. | |
| data_ref.csv.gz | Contains encoded (nominal) data related to an admission. | |
| laboratory.csv.gz | Contains laboratory results. | |
| medication.csv.gz | Contains data about medication given during ICU stay. | |
| data_range.csv.gz | Contains ranged data (from/to) | |
| unitlog.csv.gz | Information about the patient's stay |
Configuration Files
This data is found on our github repository.
docker-compose.yml
This file is needed to install our database software. See Software Description for further information, and Get Started for installation instructions.
DatasetConfiguration.conf
Our database software needs this metadata for building up the database. It contains field data types and SQL table structure, that cannot be saved in .csv files.
RooData Folder and contents
This data is used by our software and contains field and table configurations.